Your monthly iRODS developments

The Resource

Hello Reader, here is this month’s iRODS news and developments!

News

Dave Fellinger

I almost didn’t write this month’s issue - I was running late, juggling tasks, and I thought I’d have a quick look at the news over the past month, not expecting much as the UGM will have taken everyone’s attention and energy.

And I was reminded of the passing of Dave Fellinger.

I know he will be missed by his colleagues past and present, and while I knew Dave at RENCI and DDN beforehand, I can’t claim any special connection, or tell any anecdotes, but he was thoughtful and patient, and always good company, so I wanted to mark his passing in my small way.

Main Repository Activity

Open Issues

​rError in RcComm is never initialized.​

​Should DataObjInp::dataSize be initialized to 0 or -1?​

​Provide a mechanism for plugins to tell the server what flags to pass to dlopen()​

​C++ connection libraries must propagate error codes from plugins through exception types​

​Type of the size_ member of irods::file_object can lead to errors​

​Refactor parameters for resource functions in lib.py​

​C++ client connection libraries should include more information about failures​

​Should iinit show default values or available choices?​

​clang-tidy: disable readability-avoid-const-params-in-decls​

​Create C++ template project for new authentication plugin framework plugins​

​The server must reject overlapping requests to change where the delay server runs​

​msiCollRsync produces stacktrace, but works as expected​

​Create C++ project template for database plugins​

​Create C++ project template for resource plugins​

​Data object mtime not updating after ingest and istream​

​Ticket modification time is not changing​

​MariaDB 10.3+ and MySQL 8.0.31+ should use EXCEPT clause for removeAVUs​

​Report better error when writeLine("stdout") is used in a delay rule​

​test_ifsck__2650 fails due to unexpected UNIX_FILE_GET_FS_FREESPACE_ERR​

​test_delay_in_dynamic_pep__3342 fails in lib.delayAssert​

​test_authentication_PAM_without_negotiation fails due to unexpected PAM_AUTH_PASSWORD_FAILED from iinit ​

​izonereport should find plugin version​

​Metadata should be added only on data objects in & status​

​irepl -P option does not give progress information​

​Add feature test macro for Ticket Administration library to library_features.h​

​Investigate use of server_status.json.in and if it should be removed​

​Investigate use of grid_status.json.in and if it should be removed​

​Investigate use of client_hints.json.in and if it should be removed​

​ iput -b -f creates extra replicas on random resource instead of overwriting existing replicas​

Closed Issues

Closed on - 2023-06-29 14:28:37 irods::connection_pool needs to throw iRODS exceptions instead of the C++ standard exceptions​

Closed on - 2023-06-27 11:53:26 msiCollRsync as irods admin?​

Closed on - 2023-06-27 15:36:28 Add missing optional configurations to server_config.json on server upgrade​

Closed on - 2023-06-29 14:28:28 clang-tidy: demote readability-named-parameter to a warning​

Closed on - 2023-06-26 20:31:09 Add/Document special macro for hiding code from clang-tidy checks​

Closed on - 2023-06-27 16:58:23 msiDataObjChksum replNum does not work​

Closed on - 2023-06-29 14:27:08 Use strong types for user identity parameters in client_connection and connection_pool interfaces​

Closed on - 2023-06-11 00:53:49 -f option in irm doesn’t check if objects exists​

Closed on - 2023-06-08 15:07:59 Investigate use of unattended_installation.json.in and if it should be removed​

Closed on - 2023-06-29 14:28:20 clang-tidy: demote modernize-use-trailing-return-type to a warning or disable entirely​

Closed on - 2023-06-29 14:28:12 clang-tidy: demote bugprone-easily-swappable-parameters to a warning​

Closed on - 2023-06-05 09:58:43 irodsDelayServer did not start​

Closed on - 2023-06-29 14:28:04 clang-tidy: demote readability-function-cognitive-complexity to warning​

Closed on - 2023-06-29 14:27:56 clang-tidy: demote cppcoreguidelines-avoid-magic-numbers to warning​

Closed on - 2023-06-29 14:27:47 clang-tidy: demote cppcoreguidelines-pro-bounds-array-to-pointer-decay to warning​

Closed on - 2023-06-29 16:58:19 Split lib.get_resource_parent into get_resource_parent_name and get_resource_parent_id​

Closed on - 2023-06-29 14:27:39 clang-tidy: demote cert-err58-cpp to warning​

Closed on - 2023-06-23 20:41:50 izonereport should flatten the list of servers in a zone​

Closed on - 2023-06-23 20:41:47 izonereport should calculate and report checksums​

Closed on - 2023-06-28 17:33:27 Consider exposing timeout options for controlling delay server migration communication​

Closed on - 2023-06-28 17:33:24 Expose CRON settings in advanced settings​

Closed on - 2023-06-17 06:30:44 build error on rocky linux​

Closed on - 2023-06-17 06:31:42 fatal error when building in rocky linux​

Closed on - 2023-06-29 14:27:29 [gcc] -Wsequence-point warning in connection_pool.cpp​

Closed on - 2023-06-29 14:27:18 Separate authentication step in connection pool​

Closed on - 2023-06-23 20:41:45 Include resource ‘comment’ and ‘info’ in izonereport​

Closed on - 2023-06-23 20:41:51 izonereport including duplicate resource servers​

Python iRODS Client Activity

Open Issues

​iRODSSession.data_objects.put does not specify data size​

​replication does not respect irods_default_resource setting​

icommands Activity

Closed Issues

Closed on - 2023-06-17 06:30:16 build error in rocky with main branch​

externals Activity

Closed Issues

Closed on - 2023-06-17 06:32:09 “make” with dependency problem​

YODA Activity

Open Issues

​[FEATURE] Mandatory data manager role​

​[FEATURE] replace name with ‘menu’​

​[FEATURE] Add search menu at search bar as default​

Closed Issues

Closed on - 2023-06-29 07:19:36 [FEATURE] support for subdomain in ansible parameter external_users_domain_filter and oidc_domains​

Closed on - 2023-05-31 13:13:00 [BUG] adding a category with the character “_” in the name prevents the creation of the group “datamanager-“​

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No Yaks were shaved in the making of this newsletter. But I have plans for the herd stampeding towards me…

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